STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSc3378Putative phospholipase d/transphosphatidylase; protein. (575 aa)    
Predicted Functional Partners:
secA2
Probable preprotein translocase subunit seca (atpase, rna helicase)-related protein.
  
   
 0.592
iscU
Probable iron-binding protein; A scaffold on which IscS assembles Fe-S clusters. It is likely that Fe-S cluster coordination is flexible as the role of this complex is to build and then hand off Fe-S clusters.
   
 
 0.542
RSc3377
Conserved hypothetical protein; Miscellaneous; hypothetical/global homology.
       0.532
RSp0641
Probable non ribosomal peptide synthetase protein.
   
 
 0.470
RSp1522
Probable transmembrane protein.
  
  
 0.459
RSp1380
Putative pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (e3) component, and related enzymes oxidoreductase protein.
 
   
 0.447
RSc1113
Conserved hypothetical protein; Miscellaneous; hypothetical/global homology.
  
     0.445
RSc0835
Conserved hypothetical protein; Miscellaneous; hypothetical/global homology.
    
 0.429
RSc3235
Conserved hypothetical protein; Miscellaneous; hypothetical/global homology.
    
 0.429
RSc3376
Hypothetical signal peptide protein.
       0.420
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.