STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RSc3378Putative phospholipase d/transphosphatidylase; protein. (575 aa)    
Predicted Functional Partners:
secA2
Probable preprotein translocase subunit seca (atpase, rna helicase)-related protein.
  
   
 0.584
RSc3377
Conserved hypothetical protein; Miscellaneous; hypothetical/global homology.
       0.531
RSc1113
Conserved hypothetical protein; Miscellaneous; hypothetical/global homology.
  
     0.445
RSp1380
Putative pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (e3) component, and related enzymes oxidoreductase protein.
 
   
 0.442
RSc3376
Hypothetical signal peptide protein.
       0.420
RSp1522
Probable transmembrane protein.
  
  
 0.414
RSp1650
Probable cog5662, predicted transmembrane transcriptional regulator (anti-sigma factor) transcription regulator protein.
 
     0.409
RSc2017
Putative glyoxalase/extradiol ring-cleavage dioxygenase protein.
  
     0.405
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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