STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RSc3386Conserved hypothetical protein; Miscellaneous; hypothetical/global homology. (529 aa)    
Predicted Functional Partners:
RSc0921
Probable transmembrane abc transporter protein.
 0.996
metN
Probable atp-binding abc transporter protein; Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system.
 
 0.991
RSc0922
Lipoprotein; Probable abc-type metal ion transport system, periplasmic component/surface antigen abc transporter protein; Belongs to the nlpA lipoprotein family.
  
  
 
0.902
RSc3387
Probable two-component response regulator with eal domain transcription regulator protein.
      
 0.830
ate
Putative arginyl-trna--protein transferase (r-transferase) (arginyltransferase); Functions in the N-end rule pathway of protein degradation where it conjugates Leu from its aminoacyl-tRNA to the N-termini of proteins containing an N-terminal aspartate or glutamate. Belongs to the R-transferase family. Bpt subfamily.
      
 0.550
RSc0979
Probable transmembrane protein.
      
 0.549
RSc0980
Probable transmembrane protein.
      
 0.549
metY
Probable o-acetylhomoserine (thiol)-lyase (methionine/homocysteine synthase) protein.
  
    0.489
RSc3415
Miscellaneous; hypothetical/partial homology.
  
    0.489
RSp1583
Probable o-acetylhomoserine sulfhydrylase transmembrane protein.
  
    0.489
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
Server load: low (40%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.