STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSc3407Putative cog0665, glycine/d-amino acid oxidase (deaminating) oxidoreductase protein. (435 aa)    
Predicted Functional Partners:
soxA2
Probable sarcosine oxidase (alpha subunit) oxidoreductase protein; Belongs to the GcvT family.
 
 
 0.900
soxA1
Probable sarcosine oxidase (alpha subunit) oxidoreductase protein; Belongs to the GcvT family.
 
 
 0.900
RSc3410
Probable amino acid-binding periplasmic (pbp) abc transporter protein.
 
    0.798
RSc3409
Probable amino-acid transmembrane abc transporter protein.
       0.776
RSc3408
Probable atp-binding abc transporter protein.
       0.773
RSc1732
Putative binding-protein-dependent transport systems inner membrane component abc transporter.
 
    0.639
RSc1733
Probable bacterial extracellular solute-binding, family 1; signal peptide protein.
 
   
 0.579
RSc1731
Probable transmembrane abc transporter protein.
 
     0.521
goaG
Probable 4-aminobutyrate aminotransferase protein; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
 
  
 0.495
RSp0641
Probable non ribosomal peptide synthetase protein.
  
  
 0.489
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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