STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSc3408Probable atp-binding abc transporter protein. (253 aa)    
Predicted Functional Partners:
RSc3409
Probable amino-acid transmembrane abc transporter protein.
 
 0.995
RSc3410
Probable amino acid-binding periplasmic (pbp) abc transporter protein.
 
 0.993
RSp0480
Probable amino acid transmembrane abc transporter protein.
 
 0.977
gltK
Probable glutamate/aspartate transmembrane abc transporter protein.
 
 0.953
RSc1808
Probable composite atp-binding transmembrane abc transporter protein.
 
    
0.905
RSc1809
Probable composite atp-binding transmembrane abc transporter protein.
 
    
0.905
RSp1465
Probable abc-type transport system, permease component abc transporter protein.
 
      0.897
RSc1382
Probable transmembrane abc transporter protein.
 
    
 0.886
RSc2259
Probable amino acid transmembrane abc transporter protein.
 
 0.876
RSc2258
Probable amino acid transmembrane abc transporter protein.
 
 0.874
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.