STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSp0013Probable amino acid-binding periplasmic (pbp) abc transporter protein. (386 aa)    
Predicted Functional Partners:
RSp0015
Probable amino-acid transmembrane abc transporter protein; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.940
RSp0014
Probable amino-acid transmembrane lipoprotein abc transporter; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.925
RSp0016
Probable amino-acid atp-binding abc transporter protein.
 
  
 0.922
RSp0017
Probable amino-acid atp-binding abc transporter protein.
 
  
 0.906
RSc2439
Probable amino-acid transmembrane abc transporter protein; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.878
livH2
Putative amino-acid transmembrane abc transporter protein; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.847
RSp0706
Probable amino-acid composite atp-binding transmembrane abc transporter protein; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.847
RSc2438
Probable amino acid atp-binding abc transporter protein.
 
  
 0.843
RSc2248
Probable transmembrane abc transporter protein; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.837
RSc2247
Probable transmembrane abc transporter protein; Belongs to the binding-protein-dependent transport system permease family.
 
    0.830
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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