STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSp0039Putative endoribonuclease l-psp; protein. (130 aa)    
Predicted Functional Partners:
RSp0038
Probable thioesterase protein.
     0.973
RSp0037
Probable acetyl-coenzyme a synthetase (acetate--coa ligase) protein.
 
    0.926
RSp0032
Putative nadh:flavin oxidoreductases oxidoreductase protein.
 
    0.914
RSp0035
Probable enoyl-coa hydratase protein; Belongs to the enoyl-CoA hydratase/isomerase family.
 
     0.906
RSp0034
Putative transcription regulator protein.
 
     0.903
RSp0036
Probable acyl-coa dehydrogenase oxidoreductase protein.
 
 
   0.889
RSp0033
Probable oxidoreductase protein.
 
     0.853
RSc1826
Putative flavin oxidoreductase oxidoreductase protein.
 
    0.791
RSc1827
Probable thioesterase protein.
 
     0.764
RSc1828
Putative indolepyruvate:ferredoxin oxidoreductase oxidoreductase protein.
  
    0.452
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.