STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSp0044Probable transcription regulator protein. (387 aa)    
Predicted Functional Partners:
soxA1
Probable sarcosine oxidase (alpha subunit) oxidoreductase protein; Belongs to the GcvT family.
 
     0.706
soxG1
Probable sarcosine oxidase (gamma subunit) oxidoreductase protein.
 
     0.694
soxD1
Probable sarcosine oxidase (delta subunit) oxidoreductase protein.
 
     0.680
soxB1
Probable sarcosine oxidase (beta subunit) oxidoreductase protein.
 
     0.602
soxA2
Probable sarcosine oxidase (alpha subunit) oxidoreductase protein; Belongs to the GcvT family.
  
     0.567
soxG2
Probable sarcosine oxidase (gamma subunit) oxidoreductase protein.
  
     0.551
soxD2
Probable sarcosine oxidase (delta subunit) oxidoreductase protein.
  
     0.527
folB1
Probable dihydroneopterin aldolase protein.
 
     0.469
eftB
Putative electron transfer flavoprotein beta-subunit.
  
     0.469
RSp0062
Putative dioxygenase (alpha subunit) oxidoreductase protein.
  
     0.465
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.