STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RSp0054Probable transcriptional regulator transcription regulator protein. (343 aa)    
Predicted Functional Partners:
soxA1
Probable sarcosine oxidase (alpha subunit) oxidoreductase protein; Belongs to the GcvT family.
 
     0.654
soxA2
Probable sarcosine oxidase (alpha subunit) oxidoreductase protein; Belongs to the GcvT family.
 
     0.653
RSc0234
Probable transcription regulator protein.
  
 
 0.634
stcD
Probable stachydrine utilization oxidoreductase protein.
 
     0.597
soxD2
Probable sarcosine oxidase (delta subunit) oxidoreductase protein.
 
    0.592
soxD1
Probable sarcosine oxidase (delta subunit) oxidoreductase protein.
 
    0.589
soxG2
Probable sarcosine oxidase (gamma subunit) oxidoreductase protein.
 
    0.585
soxG1
Probable sarcosine oxidase (gamma subunit) oxidoreductase protein.
 
    0.580
RSp0062
Putative dioxygenase (alpha subunit) oxidoreductase protein.
 
    0.504
soxB2
Probable sarcosine oxidase (beta subunit) oxidoreductase protein.
  
     0.480
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.