STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSp0054Probable transcriptional regulator transcription regulator protein. (343 aa)    
Predicted Functional Partners:
soxA1
Probable sarcosine oxidase (alpha subunit) oxidoreductase protein; Belongs to the GcvT family.
 
     0.653
soxA2
Probable sarcosine oxidase (alpha subunit) oxidoreductase protein; Belongs to the GcvT family.
 
     0.652
RSc0234
Probable transcription regulator protein.
 
 
 0.634
stcD
Probable stachydrine utilization oxidoreductase protein.
 
     0.598
soxD2
Probable sarcosine oxidase (delta subunit) oxidoreductase protein.
 
    0.593
soxD1
Probable sarcosine oxidase (delta subunit) oxidoreductase protein.
 
    0.590
soxG2
Probable sarcosine oxidase (gamma subunit) oxidoreductase protein.
 
    0.581
soxG1
Probable sarcosine oxidase (gamma subunit) oxidoreductase protein.
 
    0.576
RSp0062
Putative dioxygenase (alpha subunit) oxidoreductase protein.
 
    0.503
soxB2
Probable sarcosine oxidase (beta subunit) oxidoreductase protein.
  
     0.480
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.