STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RSp0056Putative dipeptidase protein. (323 aa)    
Predicted Functional Partners:
RSp0057
Putative 4-vinyl reductase motif harboring protein.
 
  
 0.945
eftB
Putative electron transfer flavoprotein beta-subunit.
 
    0.871
RSp0059
Putative alpha-helical ferredoxin; oxidoreductase protein.
 
    0.856
stcD
Probable stachydrine utilization oxidoreductase protein.
 
    0.845
RSp0062
Putative dioxygenase (alpha subunit) oxidoreductase protein.
 
    0.695
glyA2
Probable serine hydroxymethyltransferase 2 (serine methylase 2)(shmt 2) protein; Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF-independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism.
  
    0.694
opuC
Putative glycine betaine transmembrane and periplasmic abc transporter protein.
 
    0.642
RSp0063
Probable ferredoxin oxidoreductase protein.
 
    0.575
eftA
Putative electron transfer flavoprotein alpha-subunit (alpha-etf).
 
    0.573
soxD1
Probable sarcosine oxidase (delta subunit) oxidoreductase protein.
 
    0.482
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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