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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSp0059Putative alpha-helical ferredoxin; oxidoreductase protein. (641 aa)    
Predicted Functional Partners:
eftB
Putative electron transfer flavoprotein beta-subunit.
 
  
 0.978
eftA
Putative electron transfer flavoprotein alpha-subunit (alpha-etf).
 
  
 0.958
RSp0057
Putative 4-vinyl reductase motif harboring protein.
 
    0.957
stcD
Probable stachydrine utilization oxidoreductase protein.
 
  
 0.956
RSp0063
Probable ferredoxin oxidoreductase protein.
 
  
 0.939
RSp0062
Putative dioxygenase (alpha subunit) oxidoreductase protein.
 
  
 0.936
RSp0056
Putative dipeptidase protein.
 
    0.857
RSc1612
Putative uncharacterized conserved protein containing a ferredoxin-like domain.
  
 
 0.735
soxA1
Probable sarcosine oxidase (alpha subunit) oxidoreductase protein; Belongs to the GcvT family.
 
  
 0.646
soxA2
Probable sarcosine oxidase (alpha subunit) oxidoreductase protein; Belongs to the GcvT family.
 
  
 0.645
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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