STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
opuCPutative glycine betaine transmembrane and periplasmic abc transporter protein. (289 aa)    
Predicted Functional Partners:
opuA
Putative glycine betaine/l-proline atp-binding abc transporter protein.
 
 0.999
RSp0067
Probable transmembrane abc transporter protein.
 
 0.998
RSc2516
Osmoprotectant transport system permease protein; Putative abc type transporter : periplasmic glycine betaine / choline-binding lipoprotein and permease components transmembrane.
 
 
 0.816
RSc1107
Probable pseudogene (abc transporter n-terminal fragment) transmembrane protein.
  
  
 0.790
RSp0063
Probable ferredoxin oxidoreductase protein.
 
  
 0.704
RSp0062
Putative dioxygenase (alpha subunit) oxidoreductase protein.
 
  
 0.658
eftB
Putative electron transfer flavoprotein beta-subunit.
 
    0.655
RSp0056
Putative dipeptidase protein.
 
    0.642
RSp0059
Putative alpha-helical ferredoxin; oxidoreductase protein.
 
  
 0.606
RSc1794
Probable atp-binding abc transporter protein; Belongs to the ABC transporter superfamily.
    
 0.583
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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