STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSp0079Putative dna-binding transcriptional regulatory transcription regulator protein. (273 aa)    
Predicted Functional Partners:
metF
Probable 5,10-methylenetetrahydrofolate reductase oxidoreductase protein; Belongs to the methylenetetrahydrofolate reductase family.
      
 0.817
scrA
Probable pts system, sucrose-specific (IIbc component) transmembrane protein.
 
  
 0.632
RSp1282
Probable pts system, fructose-specific eIIa/hpr/ei components protein.
     
 0.537
RSc3062
Probable transcription regulator protein.
  
  
 0.514
RSp0078
Putative efflux permease transmembrane protein.
       0.497
hutC
Probable histidine utilization repressor transcription regulator protein.
  
   
0.480
RSp0080
Probable transcriptional regulator protein.
  
    0.470
cynS
Putative remnant of cyanate lyase protein; Catalyzes the reaction of cyanate with bicarbonate to produce ammonia and carbon dioxide; Belongs to the cyanase family.
      
 0.467
RSp0835
Putative bifunctional nmn adenylyltransferase/nudix hydrolase : nicotinamide-nucleotide adenylyltransferase and adp compounds hydrolase protein; Belongs to the Nudix hydrolase family.
   
  
 0.448
scrR
Putative dna-binding sucrose operon transcriptional repressor transcription regulator protein.
  
   
 0.447
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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