STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSp0079Putative dna-binding transcriptional regulatory transcription regulator protein. (273 aa)    
Predicted Functional Partners:
metF
Probable 5,10-methylenetetrahydrofolate reductase oxidoreductase protein; Belongs to the methylenetetrahydrofolate reductase family.
      
 0.753
scrA
Probable pts system, sucrose-specific (IIbc component) transmembrane protein.
 
  
 0.622
RSp0078
Putative efflux permease transmembrane protein.
       0.497
RSp1282
Probable pts system, fructose-specific eIIa/hpr/ei components protein.
     
 0.496
hutC
Probable histidine utilization repressor transcription regulator protein.
  
   
0.481
RSc3062
Probable transcription regulator protein.
  
  
 0.474
RSp0080
Probable transcriptional regulator protein.
  
    0.469
scrR
Putative dna-binding sucrose operon transcriptional repressor transcription regulator protein.
  
   
 0.449
RSp0835
Putative bifunctional nmn adenylyltransferase/nudix hydrolase : nicotinamide-nucleotide adenylyltransferase and adp compounds hydrolase protein; Belongs to the Nudix hydrolase family.
   
  
 0.441
cynS
Putative remnant of cyanate lyase protein; Catalyzes the reaction of cyanate with bicarbonate to produce ammonia and carbon dioxide; Belongs to the cyanase family.
      
 0.437
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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