STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSp0087Conserved hypothetical protein; Miscellaneous; hypothetical/global homology. (174 aa)    
Predicted Functional Partners:
RSp0216
Putative type III effector protein (serine/threonine-protein kinase).
    
 0.976
hrpA
Probable atp-dependent rna helicase protein.
    
 0.957
apaH
Bis(5'-nucleosyl)-tetraphosphatase, symmetrical; Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP; Belongs to the Ap4A hydrolase family.
    
 0.936
RSc3104
Probable calcium-binding signal peptide protein.
    
 0.840
gmk
Probable guanylate kinase (gmp kinase) protein; Essential for recycling GMP and indirectly, cGMP.
    
 0.827
RSc0835
Conserved hypothetical protein; Miscellaneous; hypothetical/global homology.
   
 0.814
RSc3235
Conserved hypothetical protein; Miscellaneous; hypothetical/global homology.
   
 0.814
rhlE1
Probable atp-dependent rna helicase protein; DEAD-box RNA helicase involved in ribosome assembly. Has RNA- dependent ATPase activity and unwinds double-stranded RNA.
    
 0.750
dbpA
Probable atp-dependent rna helicase protein; Belongs to the DEAD box helicase family.
    
 0.750
RSc0952
Putative atp-dependent rna helicase protein; Belongs to the DEAD box helicase family.
    
 0.750
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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