STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSp0100Putative ferrisiderophore receptor protein. (703 aa)    
Predicted Functional Partners:
RSc2919
Putative iron transport-sensory transduction transmembrane protein.
 
  
 0.880
RSc2918
Putative extracytoplasmic function sigma factor (iron-regulated) transcription regulator protein; Belongs to the sigma-70 factor family. ECF subfamily.
  
  
 0.797
tonB
Probable tonb transmembrane protein; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.
 
 
 0.728
RSc2778
Putative tonb-related transmembrane protein.
  
 
 0.669
RSc1807
Putative siderophore receptor protein.
  
     0.668
RSp0422
Probable siderophore synthetase component protein.
  
  
 0.666
RSp0419
Probable siderophore synthetase component protein.
  
  
 0.632
RSc1805
Putative siderophore-like synthase protein.
      
 0.630
RSc1806
Probable polyketide synthase protein.
   
  
 0.596
RSp0415
Probable extracytoplasmic function sigma factor transcription regulator protein; Belongs to the sigma-70 factor family. ECF subfamily.
  
  
 0.575
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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