STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSp0116Conserved hypothetical protein; Miscellaneous; hypothetical/global homology. (427 aa)    
Predicted Functional Partners:
RSp1095
Probable activation/secretion signal peptide protein.
 
     0.774
RSc1737
Putative transmembrane outer membrane porin signal peptide protein.
  
    0.755
RSc3094
Conserved hypothetical protein; Miscellaneous; hypothetical/global homology.
  
     0.718
RSc0411
Probable transmembrane protein.
  
     0.717
RSc1084
Probable outer membrane p2; transmembrane protein.
  
    0.717
tadD2
Probable pilus assembly tadd transmembrane protein.
 
    0.717
RSc0299
Putative prolin-rich signal peptide protein.
  
     0.706
RSc0317
Probable transmembrane protein.
  
     0.689
cpaA2
Probable prepilin peptidase transmembrane protein.
  
    0.685
RSc1236
Probable outer membrane protein (porin).
  
    0.684
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.