STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pmePectinesterase precursor (pectin methylesterase) (pe). transmembrane protein; Involved in maceration and soft-rotting of plant tissue. Belongs to the pectinesterase family. (439 aa)    
Predicted Functional Partners:
pglA
Polygalacturonase precursor (pga) (pectinase). signal peptide protein; Contributes to the wilt disease production on tomato; Belongs to the glycosyl hydrolase 28 family.
  
 0.991
pehB
Exo-poly-galacturonosidase signal peptide protein; Belongs to the glycosyl hydrolase 28 family.
 
   
 0.873
pehC
Polygalacturonase transmembrane protein; Belongs to the glycosyl hydrolase 28 family.
   
 0.792
cbhA
Probable exoglucanase a (1,4-beta-cellobiosidase) protein; Belongs to the glycosyl hydrolase family 6.
  
   
 0.703
RSc3288
Probable sugar-binding lectin protein.
     
 0.618
tex
Conserved hypothetical protein; Miscellaneous; hypothetical/global homology.
      
 0.522
popW
Probable harpin protein with pectate lyase domain.
  
   
 0.519
RSp0128
Putative helicase protein.
      
 0.495
RSp0154
Putative transmembrane protein.
      
 0.495
garD
Probable d-galactarate dehydratase (d-galactarate dehydrogenase) protein.
 
     0.454
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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