STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSp0140Probable cog2165, type II secretory pathway, pseudopilin transmembrane protein. (159 aa)    
Predicted Functional Partners:
RSp0143
Putative gspd-related protein.
 
   
 0.950
RSp0141
Putative general secretion pathway gspg related transmembrane protein.
 
     0.948
RSp0142
Putative general secretion pathway gspg related transmembrane protein.
 
     0.948
RSp0149
Probable general secretion pathway gspf-related transmembrane protein.
 
  
 0.911
RSp0148
Putative general secretion pathway gspe-related protein.
 
 
 0.896
RSp0474
Putative general secretion pathway gspd-related protein; Belongs to the bacterial secretin family.
 
  
 0.797
RSp0150
Probable general secretion pathway gspg-related transmembrane protein.
 
     0.792
RSc2303
Probable type II secretory pathway, gspd-related protein.
 
   
 0.791
RSp0145
Probable transmembrane protein.
  
  
 0.791
RSp0144
Probable prolin-rich transmembrane protein.
       0.784
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.