STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RSp0143Putative gspd-related protein. (754 aa)    
Predicted Functional Partners:
RSp0142
Putative general secretion pathway gspg related transmembrane protein.
 
  
 0.951
RSp0140
Probable cog2165, type II secretory pathway, pseudopilin transmembrane protein.
 
   
 0.950
RSp0141
Putative general secretion pathway gspg related transmembrane protein.
   
 0.950
RSp0149
Probable general secretion pathway gspf-related transmembrane protein.
 
 
 
 0.937
RSp0148
Putative general secretion pathway gspe-related protein.
 
 
 
 0.918
RSp0145
Probable transmembrane protein.
  
 
 0.863
RSp0150
Probable general secretion pathway gspg-related transmembrane protein.
 
   
 0.822
pilP
Probable fimbrial type-4 assembly lipoprotein.
  
 
 0.817
pilN
Probable fimbrial type-4 assembly membrane transmembrane protein.
  
 
 0.800
RSc2302
Probable cog2165, type II secretory pathway, pseudopilin pulg-related signal peptide protein.
 
  
 0.796
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.