STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSp0145Probable transmembrane protein. (180 aa)    
Predicted Functional Partners:
RSp0143
Putative gspd-related protein.
  
 
 0.865
RSp0148
Putative general secretion pathway gspe-related protein.
  
 
 0.834
RSp0149
Probable general secretion pathway gspf-related transmembrane protein.
   
 
 0.832
pilN
Probable fimbrial type-4 assembly membrane transmembrane protein.
  
 
 0.804
RSp0140
Probable cog2165, type II secretory pathway, pseudopilin transmembrane protein.
  
  
 0.791
RSp0142
Putative general secretion pathway gspg related transmembrane protein.
  
  
 0.789
RSp0141
Putative general secretion pathway gspg related transmembrane protein.
  
  
 0.786
RSp0146
Probable transmembrane protein.
  
    0.786
RSp0144
Probable prolin-rich transmembrane protein.
       0.784
RSp0147
Miscellaneous; hypothetical/partial homology.
       0.773
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.