STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RSp0145Probable transmembrane protein. (180 aa)    
Predicted Functional Partners:
RSp0143
Putative gspd-related protein.
  
 
 0.863
RSp0148
Putative general secretion pathway gspe-related protein.
  
 
 0.830
RSp0149
Probable general secretion pathway gspf-related transmembrane protein.
   
 
 0.827
pilN
Probable fimbrial type-4 assembly membrane transmembrane protein.
  
 
 0.803
RSp0140
Probable cog2165, type II secretory pathway, pseudopilin transmembrane protein.
  
  
 0.789
RSp0142
Putative general secretion pathway gspg related transmembrane protein.
  
  
 0.788
RSp0141
Putative general secretion pathway gspg related transmembrane protein.
  
  
 0.784
RSp0146
Probable transmembrane protein.
  
    0.784
RSp0144
Probable prolin-rich transmembrane protein.
       0.782
RSp0147
Miscellaneous; hypothetical/partial homology.
       0.773
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.