STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSp0176Conserved hypothetical protein; Miscellaneous; hypothetical/global homology. (278 aa)    
Predicted Functional Partners:
hrcV
Hrp conserved hrcv transmembrane protein; Involved in the secretion of PopA, a proteinaceous elicitor of the hypersensitivity response in plants; Belongs to the FHIPEP (flagella/HR/invasion proteins export pore) family.
  
  
 0.770
hrcJ
Hrp conserved lipoprotein hrcj transmembrane.
  
  
 0.760
odhA
Probable oxoglutarate dehydrogenase oxidoreductase protein.
    
 
 0.747
sucA
Probable 2-oxoglutarate dehydrogenase e1 decarboxylase component oxidoreductase protein.
    
 
 0.747
RSp0175
Putative vgr-related protein.
      0.731
RSc2157
Putative serine/threonine protein kinase.
   
 
 0.727
RSc2256
Putative signal peptide protein.
   
 
 0.727
hrcT
Hrp conserved hrct transmembrane protein.
  
  
 0.724
RSp0177
Conserved hypothetical protein; Miscellaneous; hypothetical/global homology.
    
 0.707
hrcR
Hrp conserved hrcr transmembrane protein; Involved in the secretion of PopA, a proteinaceous elicitor of the hypersensitivity response in plants; Belongs to the FliP/MopC/SpaP family.
  
  
 0.704
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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