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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSp0181Conserved hypothetical protein; Miscellaneous; hypothetical/global homology. (134 aa)    
Predicted Functional Partners:
RSp1318
Putative transcription regulator protein.
 
    0.662
RSp1349
Putative transcription regulator protein.
 
    0.662
RSc1960
Putative transcriptional regulatory dna-binding transcription regulator protein.
 
    0.633
RSp0180
Conserved hypothetical protein; Miscellaneous; hypothetical/global homology.
       0.588
RSp1476
Conserved hypothetical protein; Miscellaneous; hypothetical/global homology.
 
     0.522
RSc1959
Conserved hypothetical protein; Miscellaneous; hypothetical/global homology.
 
     0.475
RSp0265
Hypothetical gcn5-related n-acetyltransferase protein.
  
     0.470
RSp1319
Probable cog3832, uncharacterized conserved protein.
  
     0.462
RSp1350
Probable cog3832, uncharacterized conserved protein.
  
     0.462
RSp1650
Probable cog5662, predicted transmembrane transcriptional regulator (anti-sigma factor) transcription regulator protein.
  
     0.454
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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