STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RSp0182Probable transporter transmembrane protein. (453 aa)    
Predicted Functional Partners:
RSp0183
Probable 3-carboxymuconate cyclase protein.
       0.768
RSp0184
Hypothetical protein; Miscellaneous; unknown.
       0.486
RSp0181
Conserved hypothetical protein; Miscellaneous; hypothetical/global homology.
  
    0.439
RSp0180
Conserved hypothetical protein; Miscellaneous; hypothetical/global homology.
 
     0.438
RSp0641
Probable non ribosomal peptide synthetase protein.
     
 0.429
RSp0234
Probable metabolite transport transmembrane protein.
  
     0.414
RSp0185
Putative transcription regulator protein.
     
 0.408
RSp1422
Putative peptide synthetase protein.
     
 0.405
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.