STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSp0186Probable bacterial extracellular solute-binding, family 3; abc transporter protein. (245 aa)    
Predicted Functional Partners:
RSp0185
Putative transcription regulator protein.
 
   
 0.889
RSp0631
Putative sel1-like repeat; harboring protein.
      
 0.783
RSp1013
Putative glycosyl transferase, group 1; protein.
      
 0.758
pcaJ
Probable 3-oxoadipate coa-transferase subunit b protein.
   
  
 0.624
RSp0184
Hypothetical protein; Miscellaneous; unknown.
       0.570
RSp0331
Putative transcription regulator protein.
 
     0.563
RSp0187
Hypothetical protein; Miscellaneous; unknown.
       0.519
RSp0328
Probable transcription regulator protein.
  
     0.487
RSp0183
Probable 3-carboxymuconate cyclase protein.
 
     0.483
RSp0824
Putative gluconolactonase (d-glucono-delta-lactone lactonohydrolase) protein.
  
     0.430
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.