STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSp0186Probable bacterial extracellular solute-binding, family 3; abc transporter protein. (245 aa)    
Predicted Functional Partners:
RSp0185
Putative transcription regulator protein.
 
     0.890
RSc0435
Probable 3-oxoacyl-[acyl-carrier-protein] reductase oxidoreductase.
    
 
 0.770
RSc0536
Probable short-chain dehydrogenase transmembrane protein.
    
 
 0.770
RSc2186
Putative short-chain dehydrogenase/reductase sdr; oxidoreductase protein.
    
 
 0.770
tsaC
Probable toluenesulfonate zinc-independent alcohol dehydrogenase oxidoreductase protein.
    
 
 0.770
RSp0305
Probable dehydrogenase oxidoreductase protein.
    
 
 0.770
RSp0331
Putative transcription regulator protein.
 
     0.575
RSp0184
Hypothetical protein; Miscellaneous; unknown.
       0.570
fabG2
Probable 3-oxoacyl-[acyl-carrier-protein] reductase oxidoreductase.
    
 
 0.567
fabG1
Probable 3-oxoacyl-[acyl-carrier-protein] reductase oxidoreductase; Catalyzes the NADPH-dependent reduction of beta-ketoacyl-ACP substrates to beta-hydroxyacyl-ACP products, the first reductive step in the elongation cycle of fatty acid biosynthesis. Belongs to the short-chain dehydrogenases/reductases (SDR) family.
    
 
 0.566
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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