STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSp0209Probable hydroxylase protein. (263 aa)    
Predicted Functional Partners:
RSp0641
Probable non ribosomal peptide synthetase protein.
  
  
 0.656
RSc1806
Probable polyketide synthase protein.
 
 
 0.593
RSp1422
Putative peptide synthetase protein.
  
  
 0.567
RSp0672
Lrr-gala family type III effector protein (gala 2).
  
     0.536
RSc1357
Lrr-gala family type III effector protein (gala 7).
  
     0.512
RSp0210
Hypothetical protein; Miscellaneous; unknown.
       0.496
RSc1181
Probable cog1807, 4-amino-4-deoxy-l-arabinose transferase and related glycosyltransferases of pmt family transmembrane protein.
  
     0.477
RSc1801
Probable lrr-gala family type III effector protein (gala 5).
  
     0.477
ripG
Type III effector protein gala6.
  
     0.470
RSc1800
Probable lrr-gala family type III effector protein (gala 4).
  
     0.461
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.