STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSp0209Probable hydroxylase protein. (263 aa)    
Predicted Functional Partners:
RSc1806
Probable polyketide synthase protein.
 
 
 0.623
RSp0641
Probable non ribosomal peptide synthetase protein.
  
  
 0.583
RSp1422
Putative peptide synthetase protein.
  
  
 0.563
RSp0672
Lrr-gala family type III effector protein (gala 2).
  
     0.536
RSc1810
Probable polyketide synthase protein.
 
 
 0.520
RSc1357
Lrr-gala family type III effector protein (gala 7).
  
     0.512
RSp0210
Hypothetical protein; Miscellaneous; unknown.
       0.496
RSc1181
Probable cog1807, 4-amino-4-deoxy-l-arabinose transferase and related glycosyltransferases of pmt family transmembrane protein.
  
     0.477
RSc1801
Probable lrr-gala family type III effector protein (gala 5).
  
     0.477
ripG
Type III effector protein gala6.
  
     0.470
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.