STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
vanBProbable vanillate o-demethylase (vanillate degradation ferredoxin-like) oxidoreductase protein. (317 aa)    
Predicted Functional Partners:
vanA
Probable vanillate o-demethylase oxygenase subunit oxidoreductase protein.
 
 
 0.999
RSp0709
Putative cytochrome p-450-like monooxygenase oxidoreductase protein; Belongs to the cytochrome P450 family.
 0.971
vdh
Probable vanillin dehydrogenase oxidoreductase protein; Belongs to the aldehyde dehydrogenase family.
  
 
 0.959
RSc1157
Conserved hypothetical protein; Miscellaneous; hypothetical/global homology.
    
 0.906
iscU
Probable iron-binding protein; A scaffold on which IscS assembles Fe-S clusters. It is likely that Fe-S cluster coordination is flexible as the role of this complex is to build and then hand off Fe-S clusters.
  
 0.823
RSc1810
Probable polyketide synthase protein.
   
 0.793
pcaH
Probable protocatechuate 3,4-dioxygenase (beta chain) oxidoreductase protein.
  
  
 0.706
fca
Probable ferulic acid hydratase protein; Belongs to the enoyl-CoA hydratase/isomerase family.
  
  
 0.669
nuoF
Probable nadh dehydrogenaseI(chain f) oxidoreductase protein; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Belongs to the complex I 51 kDa subunit family.
  
 
 0.659
RSp0682
Putative histamine dehydrogenase oxidoreductase protein.
   
 0.630
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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