STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSp0224Probable transcription regulator protein. (154 aa)    
Predicted Functional Partners:
fca
Probable ferulic acid hydratase protein; Belongs to the enoyl-CoA hydratase/isomerase family.
 
     0.664
RSp1208
Probable signal transduction protein eal-ggdef domains.
   
  
 0.658
RSc3207
Putative transcription regulator protein.
      
 0.641
RSp1579
Putative transcription regulator protein.
   
  
 0.641
fcs
Probable feruloyl-coa synthetase protein.
 
     0.567
hrpB
Regulatory hrpb. transcription regulator protein; Positive regulation of hypersensitive response genes involved in plant pathogenicity and partly of its own synthesis in minimal medium.
  
    0.529
RSp1387
Putative transcription regulator protein.
  
    0.492
RSc2516
Osmoprotectant transport system permease protein; Putative abc type transporter : periplasmic glycine betaine / choline-binding lipoprotein and permease components transmembrane.
  
  
 0.471
scrA
Probable pts system, sucrose-specific (IIbc component) transmembrane protein.
      
 0.446
relA
Probable gtp pyrophosphokinase (atp:gtp 3'-pyrophosphotransferase) protein; In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance.
      
 0.434
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.