STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
vdhProbable vanillin dehydrogenase oxidoreductase protein; Belongs to the aldehyde dehydrogenase family. (484 aa)    
Predicted Functional Partners:
fcs
Probable feruloyl-coa synthetase protein.
 
 
 0.968
vanA
Probable vanillate o-demethylase oxygenase subunit oxidoreductase protein.
  
 
 0.960
vanB
Probable vanillate o-demethylase (vanillate degradation ferredoxin-like) oxidoreductase protein.
  
 
 0.959
fca
Probable ferulic acid hydratase protein; Belongs to the enoyl-CoA hydratase/isomerase family.
 
 0.947
fmt
Probable methionyl-trna formyltransferase protein; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family.
 
      0.806
pobB
Probable 4-hydroxybenzoate 3-monooxygenase oxidoreductase protein.
  
 0.691
pcaH
Probable protocatechuate 3,4-dioxygenase (beta chain) oxidoreductase protein.
  
   
 0.658
RSc1141
Putative rna-binding protein, yrdc; Belongs to the SUA5 family.
   
  
 0.634
pcaC
Putative 4-carboxymuconolactone decarboxylase protein.
   
  
 0.567
RSp0641
Probable non ribosomal peptide synthetase protein.
  
 
 0.538
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.