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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSp0228Putative phenol-degradative gene regulator transcription regulator protein. (623 aa)    
Predicted Functional Partners:
rpoN2
Probable rna polymerase sigma n (sigma 54) factor transcription regulator protein; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
 
   
 0.802
rpoN1
Probable rna polymerase sigma n (sigma 54) factor transcription regulator protein; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
 
   
 0.801
phcR
Two component response regulator transcription regulator protein.
 
 
 
 0.581
RSc1598
Probable two-component transmembrane sensor histidine kinase transcription regulator protein.
 
 
 
 0.580
RSp0229
Putative benzaldehyde dehydrogenase oxidoreductase protein.
 
   
 0.514
RSc3398
Probable flavohemoprotein (hemoglobin-like) transmembrane; Belongs to the globin family.
     
 0.499
RSp0254
Probable signal transduction eal-ggdef domains transmembrane protein.
   
 
 0.475
RSp0230
Putative 3-alpha-hydroxysteroid dehydrogenase/carbonyl reductase oxidoreductase protein.
 
   
 0.471
etf
Probable electron transfer flavoprotein-ubiquinone oxidoreductase; Accepts electrons from ETF and reduces ubiquinone.
  
  
 0.432
RSc3079
Probable composite two component regulatory (sensor histidine kinase and response regulator hybrid) transcription regulator protein.
   
 
 0.424
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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