STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSp0228Putative phenol-degradative gene regulator transcription regulator protein. (623 aa)    
Predicted Functional Partners:
RSc1598
Probable two-component transmembrane sensor histidine kinase transcription regulator protein.
 
 
 
 0.857
rpoN2
Probable rna polymerase sigma n (sigma 54) factor transcription regulator protein; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
 
   
 0.802
rpoN1
Probable rna polymerase sigma n (sigma 54) factor transcription regulator protein; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
 
   
 0.801
gltB
Probable glutamate synthase (large subunit) oxidoreductase protein.
     
 0.604
RSc3079
Probable composite two component regulatory (sensor histidine kinase and response regulator hybrid) transcription regulator protein.
   
 
 0.598
RSp1676
Probable composite two-component regulatory (sensor kinase and response regulator hybrid) transcription regulator protein.
   
 
 0.598
RSc3398
Probable flavohemoprotein (hemoglobin-like) transmembrane; Belongs to the globin family.
     
 0.545
phcR
Two component response regulator transcription regulator protein.
 
 
 
 0.519
RSp0229
Putative benzaldehyde dehydrogenase oxidoreductase protein.
 
     0.504
RSp0230
Putative 3-alpha-hydroxysteroid dehydrogenase/carbonyl reductase oxidoreductase protein.
 
   
 0.467
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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