STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
fur2Probable ferric uptake transcriptional (fur)-related transcription regulator protein; Belongs to the Fur family. (151 aa)    
Predicted Functional Partners:
RSp0248
Hypothetical protein; Miscellaneous; unknown.
      0.759
cspA
Probable cold shock-like transcription regulator protein.
   
  
 0.756
rpoA
DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
   0.608
trxA
Probable thioredoxin 1 (redox factor) protein; Belongs to the thioredoxin family.
  
 
 0.591
ahpC2
Putative alkyl hydroperoxide reductase (subunit c) oxidoreductase protein; EC_number 1.6.4.-.
  
  
 0.550
ahpC1
Probable alkyl hydroperoxide reductase (subunit c) oxidoreductase protein; Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides; Belongs to the peroxiredoxin family. AhpC/Prx1 subfamily.
  
  
 0.550
gltB
Probable glutamate synthase (large subunit) oxidoreductase protein.
     
 0.510
RSc3313
Putative coa-binding protein.
  
    0.506
polA
Probable dna polymeraseIprotein; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
     
 0.492
RSc0754
Probable antioxidant (peroxidase) oxidoreductase protein.
  
  
 0.472
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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