STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
fur2Probable ferric uptake transcriptional (fur)-related transcription regulator protein; Belongs to the Fur family. (151 aa)    
Predicted Functional Partners:
RSc0754
Probable antioxidant (peroxidase) oxidoreductase protein.
  
  
 0.759
RSp0248
Hypothetical protein; Miscellaneous; unknown.
      0.759
RSc1018
Putative of unknown function upf0074; transcription regulator protein.
     
 0.674
RSp0421
Probable siderophore synthetase component protein.
      
 0.642
RSp0415
Probable extracytoplasmic function sigma factor transcription regulator protein; Belongs to the sigma-70 factor family. ECF subfamily.
      
 0.641
RSp0416
Probable ferric siderophore receptor outer membrane signal peptide protein.
      
 0.639
ssuB
Putative aliphatic sulfonates atp-binding abc transporter protein; Part of the ABC transporter complex SsuABC involved in aliphatic sulfonates import. Responsible for energy coupling to the transport system.
      
 0.630
rpoA
DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.627
trxA
Probable thioredoxin 1 (redox factor) protein; Belongs to the thioredoxin family.
  
 
 0.561
RSp0419
Probable siderophore synthetase component protein.
      
 0.560
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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