STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSp0257Putative siderophore-interacting protein. (277 aa)    
Predicted Functional Partners:
RSp1422
Putative peptide synthetase protein.
  
  
 0.936
RSp0258
Putative transcription regulator protein.
   
 0.916
RSp0292
Probable typeIsecretion system, atp-binding transmembrane abc transporter protein.
   
   0.742
RSp1182
Putative typeIsecretion system, atp-binding transmembrane abc transporter protein.
   
   0.742
RSp0641
Probable non ribosomal peptide synthetase protein.
  
  
 0.687
pabB
Putative para-aminobenzoate synthetase componentIprotein.
  
  
 0.583
RSc1811
Putative siderophore synthetase protein.
  
  
 0.561
RSp0243
Probable hemin transport protein.
  
    0.554
RSc1806
Probable polyketide synthase protein.
  
  
 0.539
trpE
Probable anthranilate synthase componentIprotein; Part of a heterotetrameric complex that catalyzes the two- step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine-binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate an [...]
  
  
 0.530
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.