STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSp0263Putative penicillin-binding protein, transpeptidase fold. (138 aa)    
Predicted Functional Partners:
RSp0264
Putative beta-lactamase; protein.
     0.994
RSp0641
Probable non ribosomal peptide synthetase protein.
  
  
 0.623
RSc1765
Probable 6-aminohexanoate-dimer hydrolase lipoprotein.
  
     0.611
RSp0265
Hypothetical gcn5-related n-acetyltransferase protein.
 
     0.601
opgD2
Probable periplasmic glucans biosynthesis transmembrane protein; Probably involved in the control of the structural glucose backbone of osmoregulated periplasmic glucans (OPGs); Belongs to the OpgD/OpgG family.
       0.562
RSc0212
Putative aspartate racemase protein.
 
  
 0.540
RSp1422
Putative peptide synthetase protein.
  
  
 0.540
RSp0596
Probable transmembrane protein.
  
   
 0.487
scrA
Probable pts system, sucrose-specific (IIbc component) transmembrane protein.
  
  
 0.475
RSc1806
Probable polyketide synthase protein.
  
  
 0.441
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.