STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSp0264Putative beta-lactamase; protein. (116 aa)    
Predicted Functional Partners:
RSp0263
Putative penicillin-binding protein, transpeptidase fold.
     0.994
RSc1765
Probable 6-aminohexanoate-dimer hydrolase lipoprotein.
  
     0.664
RSp0265
Hypothetical gcn5-related n-acetyltransferase protein.
 
     0.602
opgD2
Probable periplasmic glucans biosynthesis transmembrane protein; Probably involved in the control of the structural glucose backbone of osmoregulated periplasmic glucans (OPGs); Belongs to the OpgD/OpgG family.
       0.562
RSp0641
Probable non ribosomal peptide synthetase protein.
  
  
 0.504
RSp1422
Putative peptide synthetase protein.
  
  
 0.436
RSc1806
Probable polyketide synthase protein.
  
  
 0.423
RSc1138
Putative saccharopine dehydrogenase and relateds oxidoreductase protein.
  
   
 0.413
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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