STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
RSp0273Glutamate carboxypeptidase; Putative acetylornithine deacetylase/succinyl-diaminopimelate desuccinylase and related deacylases protein. (394 aa)    
Predicted Functional Partners:
RSc0416
Putative peptidase c56 protein.
     
 0.803
lysA
Probable diaminopimelate decarboxylase protein; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine.
     
 0.570
icd
Probable isocitrate dehydrogenase [nadp] oxidoreductase protein.
     
 0.565
epsC
Udp-n-acetylglucosamine 2-epimerase (udp-glcnac-2-epimerase) protein; May be involved in synthesis of N-acetyltrideoxygalactose, a component of exopolysaccharide EPS I which functions as a virulence factor; Belongs to the UDP-N-acetylglucosamine 2-epimerase family.
      
 0.549
RSc1629
Hypothetical protein of unknown function duf152; Belongs to the multicopper oxidase YfiH/RL5 family.
      
 0.460
RSp0270
Conserved hypothetical protein; Miscellaneous; hypothetical/global homology.
   
   0.428
argA
Probable amino-acid acetyltransferase (n-acetylglutamate synthase)(ags) (nags) protein; Belongs to the acetyltransferase family. ArgA subfamily.
  
  
 0.418
RSp0269
Conserved hypothetical protein; Miscellaneous; hypothetical/global homology.
       0.406
RSp0271
Conserved hypothetical protein; Miscellaneous; hypothetical/global homology.
       0.406
RSp0272
Conserved hypothetical protein; Miscellaneous; hypothetical/global homology.
       0.406
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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