STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSp0275Putative glycosyl hydrolase family 18 with carbohydrate binding domain transmembrane protein. (401 aa)    
Predicted Functional Partners:
RSc0769
Putative hydrolase glycosidase protein.
     
 0.911
nagZ
Putative hexosaminidase protein; Plays a role in peptidoglycan recycling by cleaving the terminal beta-1,4-linked N-acetylglucosamine (GlcNAc) from peptide- linked peptidoglycan fragments, giving rise to free GlcNAc, anhydro-N- acetylmuramic acid and anhydro-N-acetylmuramic acid-linked peptides. Belongs to the glycosyl hydrolase 3 family. NagZ subfamily.
     
 0.911
RSp0279
Putative periplasmic component of the tol transport system tolb-related signal peptide protein.
  
   
 0.748
RSp1071
Putative hemagglutinin-related protein.
  
   
 0.668
RSp0631
Putative sel1-like repeat; harboring protein.
 
     0.640
RSc0818
Putative endoglucanase c-terminal domain harboring protein.
  
   
 0.603
cbhA
Probable exoglucanase a (1,4-beta-cellobiosidase) protein; Belongs to the glycosyl hydrolase family 6.
  
   
 0.566
RSp0161
Putative transmembrane protein.
      
 0.550
RSp0924
Hypothetical protein; Miscellaneous; unknown.
      
 0.550
RSp1007
Putative acetyl transferase protein.
      
 0.550
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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