STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSp0275Putative glycosyl hydrolase family 18 with carbohydrate binding domain transmembrane protein. (401 aa)    
Predicted Functional Partners:
RSc0769
Putative hydrolase glycosidase protein.
     
 0.907
nagZ
Putative hexosaminidase protein; Plays a role in peptidoglycan recycling by cleaving the terminal beta-1,4-linked N-acetylglucosamine (GlcNAc) from peptide- linked peptidoglycan fragments, giving rise to free GlcNAc, anhydro-N- acetylmuramic acid and anhydro-N-acetylmuramic acid-linked peptides. Belongs to the glycosyl hydrolase 3 family. NagZ subfamily.
     
 0.907
RSc0514
Probable phosphotransferase protein.
     
  0.900
RSp0279
Putative periplasmic component of the tol transport system tolb-related signal peptide protein.
  
     0.737
RSp1071
Putative hemagglutinin-related protein.
  
   
 0.660
RSp0631
Putative sel1-like repeat; harboring protein.
 
     0.640
cbhA
Probable exoglucanase a (1,4-beta-cellobiosidase) protein; Belongs to the glycosyl hydrolase family 6.
 
   
 0.588
RSp0270
Conserved hypothetical protein; Miscellaneous; hypothetical/global homology.
    
 
 0.542
RSp0846
Probable awr type III effector family protein.
    
 
 0.542
RSp0847
Probable awr type III effector family protein.
    
 
 0.542
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.