STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RSp0282Probable amino-acid permease transmembrane protein. (543 aa)    
Predicted Functional Partners:
RSp1046
Probable amino acid transporter transmembrane protein.
  
     0.621
RSp0281
Putative signal transduction protein ggdef domain.
       0.594
RSp0240
Putative glycosidase possibly involved in trehalose metabolism protein.
   
 0.590
glgE
Putative alpha-amylase-related protein; Maltosyltransferase that uses maltose 1-phosphate (M1P) as the sugar donor to elongate linear or branched alpha-(1->4)-glucans. Is involved in a branched alpha-glucan biosynthetic pathway from trehalose, together with TreS, Mak and GlgB.
   
 0.590
RSp0532
Putative aminopeptidase transmembrane protein.
 
 
 
 0.562
RSp0641
Probable non ribosomal peptide synthetase protein.
  
 
 0.561
RSc1806
Probable polyketide synthase protein.
  
 
 0.467
RSc2112
Probable metabolite transport transmembrane protein.
  
     0.421
gltB
Probable glutamate synthase (large subunit) oxidoreductase protein.
  
  
 0.419
RSp0216
Putative type III effector protein (serine/threonine-protein kinase).
    
 0.412
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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