STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
dinFProbable dna-damage-inducible f transmembrane protein. (457 aa)    
Predicted Functional Partners:
acrA
Probable acriflavin resistance lipoprotein a precursor; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
      
 0.684
gapA
Probable glyceraldehyde-3-phosphate dehydrogenase (gapdh). oxidoreductase protein; Catalyzes the oxidative phosphorylation of glyceraldehyde 3- phosphate (G3P) to 1,3-bisphosphoglycerate (BPG) using the cofactor NAD. The first reaction step involves the formation of a hemiacetal intermediate between G3P and a cysteine residue, and this hemiacetal intermediate is then oxidized to a thioester, with concomitant reduction of NAD to NADH. The reduced NADH is then exchanged with the second NAD, and the thioester is attacked by a nucleophilic inorganic phosphate to produce BPG.
   
  
 0.563
rpsA
Probable 30s ribosomal subunit protein s1; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence.
  
    0.518
crtB
Putative phytoene synthase protein.
   
  
 0.503
RSp0404
Probable transmembrane protein.
   
  
 0.503
RSc2310
Probable type II secretory pathway, pseudopilin pulg-related transmembrane protein.
      
 0.499
RSp0150
Probable general secretion pathway gspg-related transmembrane protein.
      
 0.499
RSp0468
Probable general secretion pathway gspg-related transmembrane protein.
      
 0.499
RSc2301
Probable cog2165, type II secretory pathway, pseudopilin pulg-related protein.
      
 0.484
RSc2302
Probable cog2165, type II secretory pathway, pseudopilin pulg-related signal peptide protein.
      
 0.484
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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