STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hmsFPutative hemin storage signal peptide protein. (724 aa)    
Predicted Functional Partners:
hmsR
Putative hemin storage transmembrane protein.
 
  
 0.985
hmsH
Putative hemin-binding outer membrane transmembrane protein.
 
     0.946
RSp0289
Probable transmembrane protein.
       0.773
nfrB
Probable inner membrane transmembrane protein.
  
  
 0.739
fruA
Probable pts system, fructose-specific IIbc component (eIIbc-fru) (fructose-permease IIbc component) transmembrane protein.
     
 0.536
pth
Peptidyl-trna hydrolase (pth) protein; The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis. Belongs to the PTH family.
      
 0.477
RSp0285
Probable transcription regulator protein.
       0.468
RSp0177
Conserved hypothetical protein; Miscellaneous; hypothetical/global homology.
  
   
 0.467
brg11
Probable avrbs3 family type III effector protein; Exported into plant cells, where it is targeted to the nucleus and probably acts as a transcription factor. Binds DNA in a sequence-specific manner. May contribute to plant pathogenicity. Belongs to the transcription activator-like effector (TALE) family. RipTAL/RTL subfamily.
     
 0.449
mltB
Putative membrane-bound lytic murein transglycosylase b protein.
      
 0.432
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.