STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSp0294Putative hemolysin-type calcium-binding protein. (589 aa)    
Predicted Functional Partners:
RSp0292
Probable typeIsecretion system, atp-binding transmembrane abc transporter protein.
 
  
 0.918
RSp0291
Probable typeIsecretion system transmembrane protein.
 
  
 0.873
RSc0104
Putative hemolysin-type calcium-binding protein.
 
    0.783
RSc0249
Putative calcium binding hemolysin protein.
  
0.724
RSp1182
Putative typeIsecretion system, atp-binding transmembrane abc transporter protein.
 
  
 0.695
RSp1183
Probable typeIsecretion system transmembrane protein.
 
  
 0.619
RSp0290
Probable typeIsecretion system, outer membrane chanel lipoprotein; CyaE is necessary for transport of calmodulin-sensitive adenylate cyclase-hemolysin (cyclolysin). Belongs to the outer membrane factor (OMF) (TC 1.B.17) family.
  
  
 0.611
RSp0293
Probable transmembrane protein.
       0.590
RSp0641
Probable non ribosomal peptide synthetase protein.
 
  
 0.577
RSc0246
Putative calcium binding hemolysin protein.
 
0.529
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.