STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSp0310Probable macrolide-efflux transmembrane protein. (450 aa)    
Predicted Functional Partners:
RSp1422
Putative peptide synthetase protein.
 
  
 0.912
oprM
Probable outer membrane chanel lipoprotein.
  
   0.700
RSp1434
Putative acyl-coa synthetases(amp-forming) protein.
 
      0.686
mexD
Probable multidrug efflux system transmembrane protein.
   
   0.681
RSp1177
Probable transmembrane protein.
  
     0.648
mexC
Probable multidrug efflux system protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
       0.628
RSp0315
Probable transmembrane sensor kinase transcription regulator protein.
 
     0.580
RSp0314
Probable two component response regulator transcription regulator protein.
 
     0.517
RSp0641
Probable non ribosomal peptide synthetase protein.
  
  
 0.440
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.