STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
oprMProbable outer membrane chanel lipoprotein. (476 aa)    
Predicted Functional Partners:
mexC
Probable multidrug efflux system protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 
 0.972
mexD
Probable multidrug efflux system transmembrane protein.
 
 0.961
acrA
Probable acriflavin resistance lipoprotein a precursor; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
 
 0.925
RSp0818
Probable drug efflux transmembrane protein.
 
   0.862
acrB
Putative acriflavin resistance transmembrane protein.
 
   0.829
RSp0819
Probable drug efflux lipoprotein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
 
 0.808
RSp0310
Probable macrolide-efflux transmembrane protein.
  
   0.700
emrA
Probable multidrug resistance a (translocase) transmembrane protein.
 
 
 0.674
RSp1113
Probable transmembrane multidrug-efflux system lipoprotein transmembrane.
   0.624
RSp0315
Probable transmembrane sensor kinase transcription regulator protein.
 
     0.568
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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