STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSp0328Probable transcription regulator protein. (311 aa)    
Predicted Functional Partners:
leuB2
Probable 3-isopropylmalate dehydrogenase oxidoreductase protein.
 
     0.491
RSp0186
Probable bacterial extracellular solute-binding, family 3; abc transporter protein.
  
     0.487
acnA3
Probable aconitate hydratase 1 protein; Catalyzes the isomerization of citrate to isocitrate via cis- aconitate.
 
    0.467
RSc2963
Hypothetical uncharacterized protein upf0065; Miscellaneous; hypothetical/global homology.
 
     0.451
RSc0794
Probable transmembrane protein.
 
     0.425
RSp0331
Putative transcription regulator protein.
 
  
0.422
ilvH
Probable acetolactate synthase isozyme III (small subunit) protein.
   
    0.410
RSp1148
Putative predicted hydrolases or acyltransferase (alpha/beta hydrolase superfamily) signal peptide protein.
  
     0.405
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.