STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RSp0331Putative transcription regulator protein. (298 aa)    
Predicted Functional Partners:
acnA3
Probable aconitate hydratase 1 protein; Catalyzes the isomerization of citrate to isocitrate via cis- aconitate.
 
  
 0.724
RSc0794
Probable transmembrane protein.
 
     0.586
RSp0186
Probable bacterial extracellular solute-binding, family 3; abc transporter protein.
 
     0.575
RSp0835
Putative bifunctional nmn adenylyltransferase/nudix hydrolase : nicotinamide-nucleotide adenylyltransferase and adp compounds hydrolase protein; Belongs to the Nudix hydrolase family.
   
  
 0.556
leuB2
Probable 3-isopropylmalate dehydrogenase oxidoreductase protein.
 
     0.521
RSc0454
Putative fe-s oxidoreductase fad/fmn-containing dehyfrogenase oxidoreductase protein.
  
  
 0.500
RSp0641
Probable non ribosomal peptide synthetase protein.
  
 
 0.498
accD
Probable acetyl-coenzyme a carboxylase carboxyl transferase (subunit beta) protein; Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl-CoA; Belongs to the AccD/PCCB family.
  
  
 0.469
RSp0233
Probable hydrolase transmembrane protein.
 
   
 0.467
RSc2963
Hypothetical uncharacterized protein upf0065; Miscellaneous; hypothetical/global homology.
 
   
 0.463
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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