STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSp0337Probable porin precursor transmembrane protein. (351 aa)    
Predicted Functional Partners:
RSp0116
Conserved hypothetical protein; Miscellaneous; hypothetical/global homology.
  
     0.638
RSp1095
Probable activation/secretion signal peptide protein.
  
    0.592
RSp0335
Putative hns-like transcription regulator protein.
 
     0.548
RSp1594
Probable porin signal peptide protein.
  
  
 
0.548
RSc1084
Probable outer membrane p2; transmembrane protein.
  
  
 
0.544
RSc2108
Probable porin signal peptide protein.
  
  
 
0.543
RSc2760
Probable ipr001702 outer membrane (porin) signal peptide protein.
  
  
 
0.543
RSc1236
Probable outer membrane protein (porin).
  
  
 
0.542
RSp0051
Probable porin signal peptide protein.
  
  
 
0.542
RSc2136
Probable porin signal peptide protein.
  
  
 
0.540
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.