STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RSp0354Probable cog0644, dehydrogenase (flavoproteins) oxidoreductase. (419 aa)    
Predicted Functional Partners:
RSp0371
Putative 1-acyl-sn-glycerol-3-phosphate acyltransferase alpha transmembrane protein.
 
     0.831
RSp0372
Conserved hypothetical protein; Miscellaneous; hypothetical/global homology.
 
   
 0.824
RSp0366
Putative glycosyl transferase, family 2; transmembrane protein.
 
   
 0.820
RSp0360
Putative cog4706, 3-hydroxylacyl-(acyl carrier) dehydratase oxidoreductase protein.
 
   
 0.809
RSp0370
Putative acyl-carrier protein.
 
  
 0.808
RSc0434
Putative acyl carrier protein-like.
 
  
 0.804
RSp0362
Probable cog4258, predicted exporter transmembrane protein.
 
   
 0.801
RSp0363
Probable signal peptide protein; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane).
 
   
 0.799
RSp0367
Putative acyl-coenzyme a synthetases/amp-(fatty) acid ligases and c 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratase.
 
   
 0.799
RSc0436
Putative glycosyl transferase, family 2; protein.
 
   
 0.792
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.