STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSp0355Putative methylase protein. (246 aa)    
Predicted Functional Partners:
RSp0354
Probable cog0644, dehydrogenase (flavoproteins) oxidoreductase.
 
     0.597
RSp0360
Putative cog4706, 3-hydroxylacyl-(acyl carrier) dehydratase oxidoreductase protein.
 
     0.537
RSc3028
Putative signal peptide protein.
  
     0.528
RSp0372
Conserved hypothetical protein; Miscellaneous; hypothetical/global homology.
 
     0.528
RSc3030
Hypothetical precursor. signal peptide protein; Protects the bacterial cell from host peptidases.
  
     0.517
RSc3027
Probable signal peptide protein.
  
     0.510
RSp0641
Probable non ribosomal peptide synthetase protein.
     
 0.508
bioB
Probable biotin synthase protein; Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical-based mechanism; Belongs to the radical SAM superfamily. Biotin synthase family.
  
  
 0.505
RSp1422
Putative peptide synthetase protein.
     
 0.490
RSp0363
Probable signal peptide protein; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane).
  
     0.442
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.