STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RSp0355Putative methylase protein. (246 aa)    
Predicted Functional Partners:
RSp0354
Probable cog0644, dehydrogenase (flavoproteins) oxidoreductase.
 
   
 0.602
RSp0360
Putative cog4706, 3-hydroxylacyl-(acyl carrier) dehydratase oxidoreductase protein.
 
     0.535
RSc3028
Putative signal peptide protein.
  
     0.528
RSp0372
Conserved hypothetical protein; Miscellaneous; hypothetical/global homology.
 
     0.527
bioB
Probable biotin synthase protein; Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical-based mechanism; Belongs to the radical SAM superfamily. Biotin synthase family.
  
  
 0.524
RSc3030
Hypothetical precursor. signal peptide protein; Protects the bacterial cell from host peptidases.
  
     0.517
RSc3027
Probable signal peptide protein.
  
     0.510
RSp1422
Putative peptide synthetase protein.
     
 0.493
RSp0641
Probable non ribosomal peptide synthetase protein.
     
 0.486
RSp0367
Putative acyl-coenzyme a synthetases/amp-(fatty) acid ligases and c 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratase.
 
   
 0.453
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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