STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSp0414Probable ferric siderophore receptor protein. (746 aa)    
Predicted Functional Partners:
RSp1422
Putative peptide synthetase protein.
  
  
 0.938
RSp0415
Probable extracytoplasmic function sigma factor transcription regulator protein; Belongs to the sigma-70 factor family. ECF subfamily.
 
  
 0.751
RSc2814
Putative prolyl 4-hydroxylase alpha subunit homologue oxidoreductase protein.
  
  
 0.717
RSc1811
Putative siderophore synthetase protein.
  
  
 0.711
RSp0642
Probable non ribosomal peptide synthetase protein.
  
  
 0.707
prhA
Outer membrane receptor prha signal peptide protein.
 
  
 0.692
prhR
3-compartiment signal transduction system, component prhr transmembrane protein.
 
  
 0.668
prhI
3-compartiment signal transduction system, sigma factor prhi transcription regulator protein; Belongs to the sigma-70 factor family. ECF subfamily.
  
  
 0.661
RSp1642
Probable transmembrane protein.
 
  
 0.643
RSc2919
Putative iron transport-sensory transduction transmembrane protein.
 
  
 0.586
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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