STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RSp0415Probable extracytoplasmic function sigma factor transcription regulator protein; Belongs to the sigma-70 factor family. ECF subfamily. (194 aa)    
Predicted Functional Partners:
prhR
3-compartiment signal transduction system, component prhr transmembrane protein.
 
 
 0.861
RSc2919
Putative iron transport-sensory transduction transmembrane protein.
 
 
 0.850
rseA
Putative transmembrane sigma-e factor negative regulatory transcription regulator protein.
  
 
 0.781
RSp0421
Probable siderophore synthetase component protein.
  
  
 0.759
RSp0414
Probable ferric siderophore receptor protein.
 
  
 0.751
RSp0416
Probable ferric siderophore receptor outer membrane signal peptide protein.
 
  
 0.726
fur2
Probable ferric uptake transcriptional (fur)-related transcription regulator protein; Belongs to the Fur family.
      
 0.641
RSc0800
Putative ferrisiderophore receptor signal peptide protein.
 
  
 0.622
RSc1807
Putative siderophore receptor protein.
  
  
 0.597
rpoB
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.577
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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