STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSp0416Probable ferric siderophore receptor outer membrane signal peptide protein. (812 aa)    
Predicted Functional Partners:
RSp0422
Probable siderophore synthetase component protein.
 
  
 0.765
RSp0421
Probable siderophore synthetase component protein.
 
  
 0.730
tonB
Probable tonb transmembrane protein; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.
 
 
 0.717
RSp0419
Probable siderophore synthetase component protein.
 
  
 0.701
RSc2778
Putative tonb-related transmembrane protein.
  
 
 0.670
RSc1624
Conserved hypothetical protein; Miscellaneous; hypothetical/global homology.
  
 
 0.648
RSc2729
Putative ferrichrome-iron receptor protein.
  
   
 0.639
RSp0611
Probable transmembrane protein.
  
   
 0.629
RSp0423
Putative hpch/hpai aldolase; protein; Belongs to the HpcH/HpaI aldolase family.
  
    0.577
RSp0415
Probable extracytoplasmic function sigma factor transcription regulator protein; Belongs to the sigma-70 factor family. ECF subfamily.
 
    0.576
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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