STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSp0416Probable ferric siderophore receptor outer membrane signal peptide protein. (812 aa)    
Predicted Functional Partners:
RSp0419
Probable siderophore synthetase component protein.
 
  
 0.860
RSp0421
Probable siderophore synthetase component protein.
 
  
 0.820
RSp0422
Probable siderophore synthetase component protein.
 
  
 0.769
RSp0415
Probable extracytoplasmic function sigma factor transcription regulator protein; Belongs to the sigma-70 factor family. ECF subfamily.
 
  
 0.726
RSc1018
Putative of unknown function upf0074; transcription regulator protein.
      
 0.641
fur2
Probable ferric uptake transcriptional (fur)-related transcription regulator protein; Belongs to the Fur family.
      
 0.639
RSc2729
Putative ferrichrome-iron receptor protein.
  
   
 0.636
ssuB
Putative aliphatic sulfonates atp-binding abc transporter protein; Part of the ABC transporter complex SsuABC involved in aliphatic sulfonates import. Responsible for energy coupling to the transport system.
     
 0.632
sbp
Probable sulfate-binding precursor signal peptide protein.
      
 0.631
tonB
Probable tonb transmembrane protein; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.
 
 
 0.623
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.