STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSp0418Probable ornithine cyclodeaminase protein. (340 aa)    
Predicted Functional Partners:
sbnA
Probable cysteine synthase protein; Catalyzes the synthesis of N-((2S)-2-amino-2-carboxyethyl)-L- glutamate (ACEGA) from O-phospho-L-serine and L-glutamate.
 
 0.995
RSp0421
Probable siderophore synthetase component protein.
 
 
 0.987
ssd
Probable staphyloferrin b siderophore synthesis decarboxylase protein; Belongs to the Orn/Lys/Arg decarboxylase class-II family.
  
  
 0.925
RSp0419
Probable siderophore synthetase component protein.
 
  
 0.892
RSp0422
Probable siderophore synthetase component protein.
 
  
 0.870
RSp0420
Putative efflux transmembrane protein.
 
    0.822
RSp0423
Putative hpch/hpai aldolase; protein; Belongs to the HpcH/HpaI aldolase family.
 
    0.820
RSc3352
Putative ornithine cyclodeaminase protein.
  
     0.772
aatA2
Probable aspartate aminotransferase a protein.
     
 0.636
trpD1
Probable anthranilate phosphoribosyltransferase 1 protein; Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'- phosphoribosyl)-anthranilate (PRA).
      
 0.624
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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