STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSp0421Probable siderophore synthetase component protein. (611 aa)    
Predicted Functional Partners:
ssd
Probable staphyloferrin b siderophore synthesis decarboxylase protein; Belongs to the Orn/Lys/Arg decarboxylase class-II family.
 
 
 0.994
RSp0418
Probable ornithine cyclodeaminase protein.
 
 
 0.988
RSp0422
Probable siderophore synthetase component protein.
    
0.979
RSp0419
Probable siderophore synthetase component protein.
  
0.927
iucD
Probable l-lysine 6-monooxygenase (lysine n(6)-hydroxylase) oxidoreductase protein.
 
  
 0.863
sbnA
Probable cysteine synthase protein; Catalyzes the synthesis of N-((2S)-2-amino-2-carboxyethyl)-L- glutamate (ACEGA) from O-phospho-L-serine and L-glutamate.
  
  
 0.831
RSp0420
Putative efflux transmembrane protein.
 
    0.829
RSp0416
Probable ferric siderophore receptor outer membrane signal peptide protein.
 
  
 0.820
RSp0423
Putative hpch/hpai aldolase; protein; Belongs to the HpcH/HpaI aldolase family.
 
    0.816
RSp0415
Probable extracytoplasmic function sigma factor transcription regulator protein; Belongs to the sigma-70 factor family. ECF subfamily.
  
  
 0.759
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.